Mueller2008_ThrombinGeneration_minimal

  public model
Short description

This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team.
For more information see the terms of use.
To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.

Format
SBML (L2V4)
Related Publication
  • Tolerance and threshold in the extrinsic coagulation system.
  • Müller J, Brandt S, Mayerhofer K, Tjardes T, Maegele M
  • Mathematical biosciences , 2/ 2008 , Volume 211 , Issue 2 , pages: 226-254
  • Technical University Munich, Centre for Mathematical Sciences, Boltzmannstr. 3, D-85748 Garching/Munich, Germany. johannes.mueller@gsf.de
  • This paper focus on the quest for mechanisms that are able to create tolerance and an activation threshold in the extrinsic coagulation cascade. We propose that the interplay of coagulation inhibitor and blood flow creates threshold behavior. First we test this hypothesis in a minimal, four dimensional model. This model can be analysed by means of time scale analysis. We find indeed that only the interplay of blood flow and inhibition together are able to produce threshold behavior. The mechanism relays on a combination of raw substance supply and wash-out effect by the blood flow and a stabilization of the resting state by the inhibition. We use the insight into this minimal model to interpret the simulation results of a large model. Here, we find that the initiating steps (TF that produces together with fVII(a) factor Xa) does not exhibit threshold behavior, but the overall system does. Hence, the threshold behavior appears via the feedback loop (in that fIIa produces indirectly fXa that in turn produces fIIa again) inhibited by ATIII and blood flow.
Contributors
administrator, Michael Schubert

Metadata information

is
BioModels Database MODEL1108260013
BioModels Database BIOMD0000000367
Gene Ontology blood coagulation
isDescribedBy
PubMed 17936855
hasTaxon
Taxonomy Homo sapiens
hasProperty
Human Disease Ontology coronary artery disease
Curation status
Curated
Name Description Size Actions

Model files

BIOMD0000000367_url.xml SBML L2V4 representation of Mueller2008_ThrombinGeneration_minimal 6.67 KB Preview | Download

Additional files

BIOMD0000000367.svg Auto-generated Reaction graph (SVG) 845.00 bytes Preview | Download
BIOMD0000000367.sci Auto-generated Scilab file 1.37 KB Preview | Download
BIOMD0000000367.vcml Auto-generated VCML file 900.00 bytes Preview | Download
BIOMD0000000367.png Auto-generated Reaction graph (PNG) 4.27 KB Preview | Download
BIOMD0000000367-biopax2.owl Auto-generated BioPAX (Level 2) 3.74 KB Preview | Download
BIOMD0000000367.m Auto-generated Octave file 3.46 KB Preview | Download
BIOMD0000000367.xpp Auto-generated XPP file 1.53 KB Preview | Download
BIOMD0000000367_urn.xml Auto-generated SBML file with URNs 6.60 KB Preview | Download
BIOMD0000000367-biopax3.owl Auto-generated BioPAX (Level 3) 4.10 KB Preview | Download
BIOMD0000000367.pdf Auto-generated PDF file 125.58 KB Preview | Download

  • Model originally submitted by : Michael Schubert
  • Submitted: Aug 26, 2011 5:51:38 PM
  • Last Modified: Jul 3, 2018 10:29:21 AM
Revisions
  • Version: 4 public model Download this version
    • Submitted on: Jul 3, 2018 10:29:21 AM
    • Submitted by: administrator
    • With comment: replaced by model in make framework but no changes to it
  • Version: 3 public model Download this version
    • Submitted on: Jul 3, 2018 10:29:21 AM
    • Submitted by: administrator
    • With comment: replaced by model in make framework but no changes to it
  • Version: 2 public model Download this version
    • Submitted on: Oct 9, 2014 6:24:16 PM
    • Submitted by: Michael Schubert
    • With comment: Current version of Muller2008_treshold_minimal
  • Version: 1 public model Download this version
    • Submitted on: Aug 26, 2011 5:51:38 PM
    • Submitted by: Michael Schubert
    • With comment: Original import of Mueller_ThrombinGeneration_minimal
Curator's comment:
(added: 15 Sep 2011, 12:35:42, updated: 15 Sep 2011, 12:35:42)
Reproduction of figure 5 of the article in one plot: Time course of the complete minimal model with flow and activation of anti-coagulatory substances. Integrated with Copasi, plotted with Matplotlib.