BioModels Database logo

BioModels Database


Uhlén2017 - TCGA-WZ-A7V3-01A - Testicular Germ Cell Tumor (male, 21 years)

Model information
Identifier: MODEL1707116519
Original model: MODEL1707116519.xml.origin
Publication: 10.1126/science.aan2507
Submitter: Adil Mardinoglu
Age at diagnosis: 21
Gender: male
Disease: Testicular Germ Cell Tumor
Primary disease site: testis
Format: SBML L2V3
Submission: 17 Aug 2017 19:22:05 UTC
Last modified: 17 Aug 2017 19:21:56 UTC
Published: 17 Aug 2017 19:22:05 UTC
is BioModels MODEL1707116519
isDerivedFrom BioModels MODEL1402200003
hasTaxon Taxonomy Homo sapiens
isDerivedFrom Genomic Data Commons Data Portal dfdd5d0a-b87a-4b07-8e66-8ff396e86efd
hasProperty Human Disease Ontology Testicular Germ Cell Tumor
hasProperty PATO male

This is a whole genome metabolism model of a male patient diagnosed at the age of 21 years with Testicular Germ Cell Tumor affecting the patient's testis.

This model was automatically generated by tINIT (Agren, R., et al. (2014). Identification of anticancer drugs for hepatocellular carcinoma through personalized genome-scale metabolic modeling. Mol Syst Biol; 10(3), 721.) using information coming from the sample TCGA-WZ-A7V3-01A from GDC Portal (Initial release 1.0, accessed via GDC API) and, where relevant, augmented with metabolic pathway information extracted from Human Metabolic Atlas.

This model has been produced by Human Pathology Atlas project ( Uhlen, M., et al.; A pathology atlas of the human cancer transcriptome. Science.) and is currently hosted on BioModels Database and identified by MODEL1707116519.

To cite BioModels, please use: V Chelliah et al; BioModels: ten-year anniversary. Nucleic Acids Res 2015; 43 (D1): D542-D548.

To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.