Fernandez2006_ModelB

  public model
Short description

To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.

In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not.


To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.

Format
SBML (L2V1)
Related Publication
  • DARPP-32 is a robust integrator of dopamine and glutamate signals.
  • Fernandez E, Schiappa R, Girault JA, Le Novère N
  • PLoS computational biology , 12/ 2006 , Volume 2 , pages: e176
  • EMBL-EBI, Wellcome-Trust Genome Campus, Hinxton, United Kingdom.
  • Integration of neurotransmitter and neuromodulator signals in the striatum plays a central role in the functions and dysfunctions of the basal ganglia. DARPP-32 is a key actor of this integration in the GABAergic medium-size spiny neurons, in particular in response to dopamine and glutamate. When phosphorylated by cAMP-dependent protein kinase (PKA), DARPP-32 inhibits protein phosphatase-1 (PP1), whereas when phosphorylated by cyclin-dependent kinase 5 (CDK5) it inhibits PKA. DARPP-32 is also regulated by casein kinases and by several protein phosphatases. These complex and intricate regulations make simple predictions of DARPP-32 dynamic behaviour virtually impossible. We used detailed quantitative modelling of the regulation of DARPP-32 phosphorylation to improve our understanding of its function. The models included all the combinations of the three best-characterized phosphorylation sites of DARPP-32, their regulation by kinases and phosphatases, and the regulation of those enzymes by cAMP and Ca(2+) signals. Dynamic simulations allowed us to observe the temporal relationships between cAMP and Ca(2+) signals. We confirmed that the proposed regulation of protein phosphatase-2A (PP2A) by calcium can account for the observed decrease of Threonine 75 phosphorylation upon glutamate receptor activation. DARPP-32 is not simply a switch between PP1-inhibiting and PKA-inhibiting states. Sensitivity analysis showed that CDK5 activity is a major regulator of the response, as previously suggested. Conversely, the strength of the regulation of PP2A by PKA or by calcium had little effect on the PP1-inhibiting function of DARPP-32 in these conditions. The simulations showed that DARPP-32 is not only a robust signal integrator, but that its response also depends on the delay between cAMP and calcium signals affecting the response to the latter. This integration did not depend on the concentration of DARPP-32, while the absolute effect on PP1 varied linearly. In silico mutants showed that Ser137 phosphorylation affects the influence of the delay between dopamine and glutamate, and that constitutive phosphorylation in Ser137 transforms DARPP-32 in a quasi-irreversible switch. This work is a first attempt to better understand the complex interactions between cAMP and Ca(2+) regulation of DARPP-32. Progressive inclusion of additional components should lead to a realistic model of signalling networks underlying the function of striatal neurons.
Contributors
Nicolas Le Novère

Metadata information

is
BioModels Database MODEL3492674214
BioModels Database BIOMD0000000153
isDescribedBy
PubMed 17194217
hasTaxon
Taxonomy Homo sapiens
isVersionOf
Gene Ontology GO:0035235
Gene Ontology GO:0007212
Curation status
Curated
Original model(s)
http://www.ebi.ac.uk/compneur-srv/doc/Fernandez2006_modelB.eml
  • Model originally submitted by : Nicolas Le Novère
  • Submitted: 30-Oct-2007 18:59:22
  • Last Modified: 05-Jul-2012 17:47:35
Revisions
  • Version: 2 public model Download this version
    • Submitted on: 05-Jul-2012 17:47:35
    • Submitted by: Nicolas Le Novère
    • With comment: Current version of Fernandez2006_ModelB
  • Version: 1 public model Download this version
    • Submitted on: 30-Oct-2007 18:59:22
    • Submitted by: Nicolas Le Novère
    • With comment: Original import of Fernandez2006_ModelB
Curator's comment:
(added: 08 Mar 2008, 21:06:47, updated: 08 Mar 2008, 21:06:47)
Figure 5b reproduced by SBMLodeSolver